Research workbench
AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada (Q55075)
Analyse AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q55075
- Type
- protein
- Length
- 324 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xAA02A2FF70d56DfE0213584307973a4Afb1e909E
- Molecule
- DNA repair and recombination protein rada
- UniProt
- Q55075
- Pockets
- 3 · best druggability 0.43
Structure
1 distinct chain · 41% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair and recombination protein rada | protein | 324 | 41% helix, 21% strand | Q55075 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 190 | 0.43 | 0.73 | 25 | empty |
| 2 | 70 | 0.32 | 0.75 | 18 | empty |
| 3 | 72 | 0.31 | 0.74 | 14 | empty |
Compared structures
- 2ZUC · Crystal structure of left-handed RadA filament · an experimental structure of the same protein · chain A against B, TM-score 0.69
- 2ZUC · Crystal structure of left-handed rada filament · an experimental structure of the same protein · chain A against B, TM-score 0.69
- 2ZUD · Crystal structure of left-handed rada filament · an experimental structure of the same protein · chain A against B, TM-score 0.68
- 2ZUD · Crystal Structure of Left-handed RadA Filament · an experimental structure of the same protein · chain A against B, TM-score 0.68
- 2DFL · Crystal structure of left-handed rada filament · an experimental structure of the same protein · chain A against A, TM-score 0.68
- 2DFL · Crystal structure of left-handed RadA filament · an experimental structure of the same protein · chain A against A, TM-score 0.68
- 2BKE · Conformational flexibility revealed by the crystal structure of a crenarchaeal rada · an experimental structure of the same protein · chain A against A, TM-score 0.68
- 2BKE · Conformational Flexibility Revealed by the Crystal Structure of a Crenarchaeal RadA · an experimental structure of the same protein · chain A against A, TM-score 0.68
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q55075
- Elsewhere: UniProt Q55075 · AlphaFold DB Q55075
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