MolNFT v1 · #56910 · protein
Crystal structure of left-handed rada filament
2ZUD · DNA repair and recombination protein rada: “Crystal structure of left-handed rada filament”. X-ray diffraction, 6 pockets (best druggability 0.77). MolNFT v1 #56910 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2ZUD
- Type
- protein
- Length
- 592 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA repair and recombination protein rada
- UniProt
- Q55075
- Pockets
- 6 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair and recombination protein rada | protein | 295 | 40% helix, 20% strand | Q55075 |
| B | DNA repair and recombination protein rada | protein | 297 | 40% helix, 20% strand | Q55075 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 983 | 0.77 | 0.79 | 82 | empty |
| 2 | 188 | 0.55 | 0.79 | 25 | empty |
| 3 | 106 | 0.48 | 0.80 | 20 | empty |
| 4 | 118 | 0.42 | 0.77 | 25 | empty |
| 5 | 128 | 0.41 | 0.76 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1317 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q55075
- Elsewhere: RCSB PDB 2ZUD · PDBe 2ZUD · UniProt Q55075
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