MolNFT v1 · #313942 · protein

AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center protein (P06004)

P06004: “AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center protein (P06004)”. 7 pockets (best druggability 0.66). MolNFT v1 #313942 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P06004
Type: protein
Length: 473 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xC8d0a0DC57E6d8881262B3e948BBDE57dA8654E4
Molecule: Photosystem II CP43 reaction center protein
UniProt: P06004
Pockets: 7 · best druggability 0.66

Structure

1 distinct chain · 55% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Photosystem II CP43 reaction center protein	protein	473	55% helix, 5% strand	P06004

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	499	0.66	0.76	31	empty
2	468	0.60	0.74	44	empty
3	285	0.60	0.79	38	empty
4	93	0.39	0.76	19	empty
5	74	0.31	0.74	13	empty

Compared structures

5XNL · Structure of stacked C2S2M2-type psii-lhcii supercomplex from pisum sativum · an experimental structure of the same protein · chain A against C, TM-score 0.95
5XNM · Structure of unstacked C2S2M2-type psii-lhcii supercomplex from pisum sativum · an experimental structure of the same protein · chain A against C, TM-score 0.94
6YP7 · Psii-lhcii C2S2 supercomplex from pisum sativum grown in high light conditions · an experimental structure of the same protein · chain A against c, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06004
Elsewhere: UniProt P06004 · AlphaFold DB P06004

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