Research workbench
AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center protein (P06004)
Analyse AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P06004
- Type
- protein
- Length
- 473 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xC8d0a0DC57E6d8881262B3e948BBDE57dA8654E4
- Molecule
- Photosystem II CP43 reaction center protein
- UniProt
- P06004
- Pockets
- 7 · best druggability 0.66
Structure
1 distinct chain · 55% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem II CP43 reaction center protein | protein | 473 | 55% helix, 5% strand | P06004 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 499 | 0.66 | 0.76 | 31 | empty |
| 2 | 468 | 0.60 | 0.74 | 44 | empty |
| 3 | 285 | 0.60 | 0.79 | 38 | empty |
| 4 | 93 | 0.39 | 0.76 | 19 | empty |
| 5 | 74 | 0.31 | 0.74 | 13 | empty |
Compared structures
- 5XNL · Structure of stacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum · an experimental structure of the same protein · chain A against c, TM-score 0.95
- 5XNL · Structure of stacked C2S2M2-type psii-lhcii supercomplex from pisum sativum · an experimental structure of the same protein · chain A against C, TM-score 0.95
- 5XNM · Structure of unstacked C2S2M2-type psii-lhcii supercomplex from pisum sativum · an experimental structure of the same protein · chain A against C, TM-score 0.94
- 5XNM · Structure of unstacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum · an experimental structure of the same protein · chain A against C, TM-score 0.94
- 6YP7 · Psii-lhcii C2S2 supercomplex from pisum sativum grown in high light conditions · an experimental structure of the same protein · chain A against c, TM-score 0.93
- 6YP7 · PSII-LHCII C2S2 supercomplex from Pisum sativum grown in high light conditions · an experimental structure of the same protein · chain A against c, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06004
- Elsewhere: UniProt P06004 · AlphaFold DB P06004
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