MolNFT v1 · #313859 · protein

AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center protein (P56778)

P56778: “AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center protein (P56778)”. 7 pockets (best druggability 0.63). MolNFT v1 #313859 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P56778
Type: protein
Length: 473 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x80D2ac0F5e3268bC5C1d28BBAA07E3169BB02b79
Molecule: Photosystem II CP43 reaction center protein
UniProt: P56778
Pockets: 7 · best druggability 0.63

Structure

1 distinct chain · 55% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Photosystem II CP43 reaction center protein	protein	473	55% helix, 5% strand	P56778

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	392	0.63	0.77	30	empty
2	518	0.62	0.75	49	empty
3	261	0.62	0.80	29	empty
4	78	0.37	0.77	18	empty
5	80	0.30	0.72	17	empty

Compared structures

7OUI · Structure of C2S2M2-type photosystem supercomplex from arabidopsis thaliana… · an experimental structure of the same protein · chain A against C, TM-score 0.90
5MDX · Cryo-EM structure of the PSII supercomplex from Arabidopsis thaliana · an experimental structure of the same protein · chain A against C, TM-score 0.90
5MDX · Cryo-EM structure of the psii supercomplex from arabidopsis thaliana · an experimental structure of the same protein · chain A against C, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P56778
Elsewhere: UniProt P56778 · AlphaFold DB P56778

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