Research workbench
AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center protein (P56778)
Analyse AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P56778
- Type
- protein
- Length
- 473 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x80D2ac0F5e3268bC5C1d28BBAA07E3169BB02b79
- Molecule
- Photosystem II CP43 reaction center protein
- UniProt
- P56778
- Pockets
- 7 · best druggability 0.63
Structure
1 distinct chain · 55% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem II CP43 reaction center protein | protein | 473 | 55% helix, 5% strand | P56778 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 392 | 0.63 | 0.77 | 30 | empty |
| 2 | 518 | 0.62 | 0.75 | 49 | empty |
| 3 | 261 | 0.62 | 0.80 | 29 | empty |
| 4 | 78 | 0.37 | 0.77 | 18 | empty |
| 5 | 80 | 0.30 | 0.72 | 17 | empty |
Compared structures
- 7OUI · Structure of C2S2M2-type Photosystem supercomplex from Arabidopsis thaliana… · an experimental structure of the same protein · chain A against c, TM-score 0.90
- 7OUI · Structure of C2S2M2-type photosystem supercomplex from arabidopsis thaliana… · an experimental structure of the same protein · chain A against C, TM-score 0.90
- 5MDX · Cryo-EM structure of the PSII supercomplex from Arabidopsis thaliana · an experimental structure of the same protein · chain A against C, TM-score 0.90
- 5MDX · Cryo-EM structure of the psii supercomplex from arabidopsis thaliana · an experimental structure of the same protein · chain A against C, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56778
- Elsewhere: UniProt P56778 · AlphaFold DB P56778
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