Research workbench
1.65 ångström crystal structure of serine-rich repeat adhesion glycoprotein (SRR1) from streptococcus agalactiae
Analyse 1.65 ångström crystal structure of serine-rich repeat adhesion glycoprotein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4MBO
- Type
- protein
- Length
- 308 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serine-rich repeat adhesion glycoprotein (SRR1)
- UniProt
- Q8E473
- Ligands
- CA
- Pockets
- 2 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serine-rich repeat adhesion glycoprotein (SRR1) | protein | 308 | 4% helix, 49% strand | Q8E473 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A
- BME · Beta-mercaptoethanol · additive · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 163 | 0.47 | 0.76 | 29 | empty |
| 2 | 58 | 0.28 | 0.74 | 14 | empty |
Modifications
Observed in the structure: 1 covalent, 1 modified (additive adduct, methylation).
Compared structures
- 4MBO · 1.65 Angstrom Crystal Structure of Serine-rich Repeat Adhesion Glycoprotein (Srr1) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8E473
- Elsewhere: RCSB PDB 4MBO · PDBe 4MBO · UniProt Q8E473
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