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Radiation damage study of cu T6-insulin - 0.01 mgy

Analyse Radiation damage study of cu T6-insulin - 0.01 mgy in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4M4F
Type
protein
Length
100 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Insulin
UniProt
P01317
Ligands
CU

Structure

x-ray diffraction · 3 distinct chains · 53% helix, 13% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, CInsulinprotein2167% helix, 10% strandP01317
BInsulinprotein2850% helix, 14% strandP01317
DInsulinprotein3047% helix, 13% strandP01317

Ligands and binding sites

  • CU · Copper (II) ion · metal · 2 copies · chains B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

5 interfaces between chains.

  • C–D · 897 Ų buried · 9 hydrogen bonds · protein-protein
  • A–B · 806 Ų buried · 13 hydrogen bonds · protein-protein
  • B–D · 641 Ų buried · 7 hydrogen bonds · protein-protein
  • B–C · 60 Ų buried · 0 hydrogen bonds · protein-protein
  • A–D · 42 Ų buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

  • 4M4F · Radiation damage study of Cu T6-insulin - 0.01 MGy · the same entry in another collection · chain A against A, TM-score 1.00
  • P01317 · AlphaFold monomer V2.0 prediction for insulin (P01317) · a predicted model of the same protein · chain B against A, TM-score 0.43

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