Research workbench
Crystal structure of the ligand binding region of staphylococcal adhesion srap
Analyse Crystal structure of the ligand binding region of staphylococcal adhesion srap in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4M00
- Type
- protein
- Length
- 501 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serine-rich adhesin for platelets
- UniProt
- Q2FUW1
- Ligands
- GLC, FRU, CA
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serine-rich adhesin for platelets | protein | 501 | 5% helix, 46% strand | Q2FUW1 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · chains A
- FRU · beta-D-fructofuranose · sugar · chains A
- CA · Calcium ion · metal · 3 copies · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 4M00 · Crystal structure of the ligand binding region of staphylococcal adhesion SraP · the same entry in another collection · chain A against A, TM-score 1.00
- Q2FUW1 · AlphaFold monomer V2.0 prediction for serine-rich adhesin for platelets (Q2FUW1) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2FUW1
- Elsewhere: RCSB PDB 4M00 · PDBe 4M00 · UniProt Q2FUW1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.