Research workbench
Crystal structure of CPSET8 from cryptosporidium, CGD4_370
Analyse Crystal structure of CPSET8 from cryptosporidium, CGD4_370 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4LDG
- Type
- protein
- Length
- 216 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein with a set domain within carboxy region
- UniProt
- Q5CQK4
- Pockets
- 3 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein with a set domain within carboxy region | protein | 216 | 31% helix, 26% strand | Q5CQK4 |
Ligands and binding sites
- MLI · Malonate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.64 | 0.93 | 18 | empty |
| 2 | 110 | 0.48 | 0.80 | 28 | empty |
| 3 | 59 | 0.30 | 0.75 | 16 | empty |
Compared structures
- 4LDG · Crystal Structure of CpSET8 from Cryptosporidium, cgd4_370 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5CQK4
- Elsewhere: RCSB PDB 4LDG · PDBe 4LDG · UniProt Q5CQK4
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