Research workbench
Crystal structure of sporosarcina pasteurii uree bound to NI2+ and ZN2+
Analyse Crystal structure of sporosarcina pasteurii uree bound to NI2+ and ZN2+ in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4L3K
- Type
- protein
- Length
- 282 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Urease accessory protein uree
- UniProt
- P50049
- Ligands
- NI, ZN
- Pockets
- 2 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Urease accessory protein uree | protein | 141 | 21% helix, 40% strand | P50049 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.45 | 0.80 | 13 | empty |
| 2 | 82 | 0.40 | 0.77 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 848 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 4L3K · Crystal structure of Sporosarcina pasteurii UreE bound to Ni2+ and Zn2+ · the same entry in another collection · chain A against A, TM-score 1.00
- P50049 · AlphaFold monomer V2.0 prediction for urease accessory protein uree (P50049) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50049
- Elsewhere: RCSB PDB 4L3K · PDBe 4L3K · UniProt P50049
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