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Structure of the streptococcus pneumoniae leucyl-tRNA synthetase editing domain

Analyse Structure of the streptococcus pneumoniae leucyl-tRNA synthetase editing domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4K48
Type: protein
Length: 183 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Leucine--tRNA ligase
EC: 6.1.1.4
UniProt: B8ZKS5
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Leucine--tRNA ligase (EC 6.1.1.4)	protein	183	30% helix, 23% strand	B8ZKS5

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	171	0.52	0.79	27	empty

Compared structures

4K48 · Structure of the Streptococcus pneumoniae leucyl-tRNA synthetase editing domain · the same entry in another collection · chain A against A, TM-score 1.00
B8ZKS5 · AlphaFold monomer V2.0 prediction for leucine--tRNA ligase (B8ZKS5) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B8ZKS5
Elsewhere: RCSB PDB 4K48 · PDBe 4K48 · UniProt B8ZKS5

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