Research workbench
Crystal structure of yeast QRI7 homodimer
Analyse Crystal structure of yeast QRI7 homodimer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4K25
- Type
- protein
- Length
- 355 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable tRNA threonylcarbamoyladenosine biosynthesis protein QRI7, mitochondrial
- UniProt
- P43122
- Ligands
- ZN, CA
- Pockets
- 2 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable tRNA threonylcarbamoyladenosine biosynthesis protein QRI7, mitochondrial | protein | 355 | 39% helix, 19% strand | P43122 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 87 | 0.33 | 0.74 | 20 | empty |
| 2 | 92 | 0.32 | 0.73 | 15 | ZN |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P43122
- Elsewhere: RCSB PDB 4K25 · PDBe 4K25 · UniProt P43122
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