Research workbench

Structure of wild type pseudomonas aeruginosa fabf (kasii) in complex with ligand

Analyse Structure of wild type pseudomonas aeruginosa fabf (kasii) in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4JPF
Type: protein
Length: 411 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 3-oxoacyl-[acyl-carrier-protein] synthase 2
EC: 2.3.1.179
UniProt: G3XDA2
Ligands: 1LR, MG, K
Pockets: 1 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.179)	protein	411	38% helix, 21% strand	G3XDA2

Ligands and binding sites

1LR · 3-(benzoylamino)-2-hydroxybenzoic acid · ligand · chains A
MG · Magnesium ion · metal · chains A
K · Potassium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	126	0.57	0.83	37	empty

Compared structures

4JPF · Structure of wild type Pseudomonas aeruginosa FabF (KASII) in Complex with ligand · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G3XDA2
Elsewhere: RCSB PDB 4JPF · PDBe 4JPF · UniProt G3XDA2

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.