Research workbench
Crystal structure of cmla, a diiron beta-hydroxylase from streptomyces venezuelae
Analyse Crystal structure of cmla, a diiron beta-hydroxylase from streptomyces… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4JO0
- Type
- protein
- Length
- 522 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cmla
- EC
- 1.14.-.-
- UniProt
- F2RB80
- Ligands
- FE, K, O
- Pockets
- 7 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cmla (EC 1.14.-.-) | protein | 522 | 36% helix, 22% strand | F2RB80 |
Ligands and binding sites
- FE · Fe (III) ion · metal · 2 copies · chains A
- K · Potassium ion · metal · 2 copies · chains A
- O · Oxygen atom · ion · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 283 | 0.67 | 0.83 | 35 | ACT |
| 2 | 67 | 0.57 | 0.88 | 23 | empty |
| 3 | 138 | 0.52 | 0.80 | 22 | empty |
| 4 | 234 | 0.51 | 0.75 | 21 | empty |
| 5 | 141 | 0.49 | 0.78 | 25 | empty |
Compared structures
- 4JO0 · Crystal Structure of CmlA, a diiron beta-hydroxylase from Streptomyces venezuelae · the same entry in another collection · chain A against A, TM-score 1.00
- F2RB80 · AlphaFold monomer V2.0 prediction for 4-amino-L-phenylalanyl-[cmlp… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F2RB80
- Elsewhere: RCSB PDB 4JO0 · PDBe 4JO0 · UniProt F2RB80
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