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Crystal structure of alpha-COP/EMP47P complex

Analyse Crystal structure of alpha-COP/EMP47P complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4J8B
Type: protein
Length: 304 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coatomer alpha subunit; EMP47P
UniProt: Q96WV5
Pockets: 1 · best druggability 0.82

Structure

x-ray diffraction · 2 distinct chains · 1% helix, 56% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coatomer alpha subunit	protein	298	1% helix, 57% strand	Q96WV5
B	EMP47P	protein	6	0% helix, 0% strand	—

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	768	0.82	0.85	57	empty

Interfaces

1 interface between chains.

A–B · 417 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

4J8B · Crystal structure of alpha-COP/Emp47p complex · the same entry in another collection · chain A against A, TM-score 1.00
Q96WV5 · AlphaFold monomer V2.0 prediction for putative coatomer subunit alpha (Q96WV5) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96WV5
Elsewhere: RCSB PDB 4J8B · PDBe 4J8B · UniProt Q96WV5

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