Research workbench
BMLP3 - C2 crystal form
Analyse BMLP3 - C2 crystal form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4IY9
- Type
- protein
- Length
- 470 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 30K protein 1
- UniProt
- H9J4F6
- Ligands
- IOD
- Pockets
- 4 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 30K protein 1 | protein | 235 | 31% helix, 33% strand | H9J4F6 |
Ligands and binding sites
- IOD · Iodide ion · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 304 | 0.57 | 0.76 | 47 | empty |
| 2 | 107 | 0.49 | 0.80 | 29 | IOD |
| 3 | 83 | 0.41 | 0.79 | 21 | empty |
| 4 | 50 | 0.24 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 819 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 4IY9 · Bmlp3 - C2 crystal form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H9J4F6
- Elsewhere: RCSB PDB 4IY9 · PDBe 4IY9 · UniProt H9J4F6
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