Research workbench
Crystal structure of truncated bovine viral diarrhea virus 1 E2 envelope protein
Analyse Crystal structure of truncated bovine viral diarrhea virus 1 E2 envelope protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ILD
- Type
- protein
- Length
- 472 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Envelope glycoprotein E2
- UniProt
- P19711
- Ligands
- IUM, NAG, CA
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Envelope glycoprotein E2 | protein | 235 | 0% helix, 46% strand | P19711 |
| B | Envelope glycoprotein E2 | protein | 237 | 0% helix, 37% strand | P19711 |
Ligands and binding sites
- IUM · Uranyl (VI) ion · ligand · 4 copies · chains B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 16 copies · chains A, B
- CA · Calcium ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.44 | 0.82 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 621 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 13 disulfide, 8 glycan (disulfide, N-glycosylation).
Compared structures
- 4ILD · Crystal structure of truncated Bovine viral diarrhea virus 1 E2 envelope protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19711
- Elsewhere: RCSB PDB 4ILD · PDBe 4ILD · UniProt P19711
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.