Research workbench
Solution NMR structure of self-complementary duplex 5'-D(AGGCG*CCT)2 containing a trimethylene crosslink at the N2 position of G*. model of a malondialdehyde crosslink
Analyse Solution NMR structure of self-complementary duplex 5'-D(AGGCG*CCT)2 containing… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1HZ2
- Type
- DNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*AP*GP*GP*CP*GP*CP*CP*T)-3')
- Ligands
- TME
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*AP*GP*GP*CP*GP*CP*CP*T)-3') | dna | 8 | — | — |
Ligands and binding sites
- TME · Propane · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 425 Ų buried · 35 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 1HZ2 · Solution NMR structure of self-complementary duplex 5'-D(AGGCG*CCT)2 containing a… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1HZ2 · PDBe 1HZ2
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