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Polycrystalline T6 bovine insulin: anisotropic lattice evolution and novel structure refinement strategy

Analyse Polycrystalline T6 bovine insulin: anisotropic lattice evolution and novel… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4IDW
Type
protein
Length
102 residues
Chains
4
Method
powder diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Insulin a chain; Insulin B chain
UniProt
P01317
Ligands
ZN

Structure

powder diffraction · 2 distinct chains · 43% helix, 12% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, CInsulin a chainprotein2157% helix, 10% strandP01317
B, DInsulin B chainprotein3033% helix, 13% strandP01317

Ligands and binding sites

  • ZN · Zinc ion · metal · 2 copies · chains B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

5 interfaces between chains.

  • C–D · 908 Ų buried · 15 hydrogen bonds · protein-protein
  • A–B · 867 Ų buried · 13 hydrogen bonds · protein-protein
  • B–D · 666 Ų buried · 10 hydrogen bonds · protein-protein
  • B–C · 53 Ų buried · 1 hydrogen bond · protein-protein
  • A–D · 47 Ų buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

  • 4IDW · Polycrystalline T6 Bovine Insulin: Anisotropic Lattice Evolution and Novel Structure… · the same entry in another collection · chain A against A, TM-score 1.00
  • P01317 · AlphaFold monomer V2.0 prediction for insulin (P01317) · a predicted model of the same protein · chain B against A, TM-score 0.38

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