Research workbench
The crystal structure of serralysin
Analyse The crystal structure of serralysin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4I35
- Type
- protein
- Length
- 469 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serralysin
- Ligands
- CA, ZN
- Pockets
- 3 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 19% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serralysin | protein | 469 | 19% helix, 23% strand | — |
Ligands and binding sites
- CA · Calcium ion · metal · 7 copies · chains A
- ZN · Zinc ion · metal · chains A
- GOL · Glycerol · additive · 5 copies · chains A
- HEX · Hexane · additive · 2 copies · chains A
- OCT · N-octane · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.49 | 0.80 | 20 | GOL |
| 2 | 78 | 0.33 | 0.75 | 15 | GOL |
| 3 | 61 | 0.26 | 0.72 | 19 | empty |
Compared structures
- 4I35 · The crystal structure of serralysin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4I35 · PDBe 4I35
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