Research workbench
DNA octamer D (gtsegtacac) partially crosslinked with platinum
Analyse DNA octamer D (gtsegtacac) partially crosslinked with platinum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4H5A
- Type
- DNA
- Length
- 8 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3')
- Ligands
- PT
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3') | dna | 8 | — | — |
Ligands and binding sites
- PT · Platinum (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 4H5A · DNA octamer D (GTseGTACAC) partially crosslinked with platinum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4H5A · PDBe 4H5A
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