Research workbench
Crystal structure of a proposed galactarolactone cycloisomerase from agrobacterium tumefaciens, target efi-500704, with bound ca, disordered loops
Analyse Crystal structure of a proposed galactarolactone cycloisomerase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4GGB
- Type
- protein
- Length
- 348 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein
- UniProt
- A9CEQ8
- Ligands
- CA, CL
- Pockets
- 3 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative uncharacterized protein | protein | 348 | 44% helix, 19% strand | A9CEQ8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 136 | 0.54 | 0.81 | 22 | empty |
| 2 | 85 | 0.34 | 0.75 | 15 | CA |
| 3 | 58 | 0.29 | 0.74 | 16 | empty |
Compared structures
- 4GGB · Crystal structure of a proposed galactarolactone cycloisomerase from agrobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
- A9CEQ8 · AlphaFold monomer V2.0 prediction for D-galactarolactone cycloisomerase (A9CEQ8) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9CEQ8
- Elsewhere: RCSB PDB 4GGB · PDBe 4GGB · UniProt A9CEQ8
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