Research workbench
X-ray structure of yeast flavohemoglobin
Analyse X-ray structure of yeast flavohemoglobin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4G1V
- Type
- protein
- Length
- 398 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flavohemoglobin
- UniProt
- A6ZUP2
- Ligands
- HEM, FAD, K, NO2
- Pockets
- 2 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flavohemoglobin | protein | 398 | 47% helix, 20% strand | A6ZUP2 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- K · Potassium ion · metal · chains A
- NO2 · Nitrite ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 984 | 0.84 | 0.85 | 91 | HEM, FAD, NO2 |
| 2 | 258 | 0.50 | 0.74 | 34 | empty |
Compared structures
- 4G1V · X-ray structure of yeast flavohemoglobin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6ZUP2
- Elsewhere: RCSB PDB 4G1V · PDBe 4G1V · UniProt A6ZUP2
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