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Crystal structure of the bacteriocin syringacin M from pseudomonas syringae pv. tomato DC3000

Analyse Crystal structure of the bacteriocin syringacin M from pseudomonas syringae pv.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4FZM
Type: protein
Length: 276 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bacteriocin
UniProt: Q88A25
Ligands: CA
Pockets: 1 · best druggability 0.31

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Bacteriocin	protein	276	38% helix, 18% strand	Q88A25

Ligands and binding sites

CA · Calcium ion · metal · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.31	0.75	14	empty

Compared structures

4FZM · Crystal structure of the bacteriocin syringacin M from Pseudomonas syringae pv. tomato… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q88A25
Elsewhere: RCSB PDB 4FZM · PDBe 4FZM · UniProt Q88A25

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