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Crystal structure of pseudomonas aeruginosa OCCK10 (opdn)

Analyse Crystal structure of pseudomonas aeruginosa OCCK10 (opdn) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4FSO
Type: protein
Length: 694 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable porin
UniProt: Q9HWK2
Ligands: CA
Pockets: 6 · best druggability 0.75

Structure

x-ray diffraction · 2 distinct chains · 1% helix, 64% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable porin	protein	354	1% helix, 64% strand	Q9HWK2
B	Probable porin	protein	340	0% helix, 64% strand	Q9HWK2

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A
C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 9 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	768	0.75	0.80	90	CA
2	742	0.67	0.75	91	empty
3	519	0.61	0.74	46	C8E
4	138	0.46	0.78	22	empty
5	147	0.42	0.74	23	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

4FSO · Crystal Structure of Pseudomonas aeruginosa OccK10 (OpdN) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9HWK2
Elsewhere: RCSB PDB 4FSO · PDBe 4FSO · UniProt Q9HWK2

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