Research workbench
Alcohol dehydrogenase from oenococcus oeni
Analyse Alcohol dehydrogenase from oenococcus oeni in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4FR2
- Type
- protein
- Length
- 383 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 1,3-propanediol dehydrogenase
- UniProt
- A0NIJ1
- Ligands
- NI
- Pockets
- 4 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 1,3-propanediol dehydrogenase | protein | 383 | 51% helix, 10% strand | A0NIJ1 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 675 | 0.74 | 0.80 | 77 | empty |
| 2 | 93 | 0.60 | 0.88 | 26 | empty |
| 3 | 52 | 0.52 | 0.87 | 14 | empty |
| 4 | 72 | 0.36 | 0.77 | 16 | empty |
Compared structures
- 4FR2 · Alcohol dehydrogenase from Oenococcus oeni · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0NIJ1
- Elsewhere: RCSB PDB 4FR2 · PDBe 4FR2 · UniProt A0NIJ1
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