Research workbench
Bacterial phosphotransferase
Analyse Bacterial phosphotransferase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4FPP
- Type
- protein
- Length
- 621 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphotransferase
- UniProt
- Q9A2T6
- Ligands
- MG, NI
- Pockets
- 4 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 52% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphotransferase | protein | 205 | 52% helix, 20% strand | Q9A2T6 |
| B, C | Phosphotransferase | protein | 208 | 52% helix, 20% strand | Q9A2T6 |
Ligands and binding sites
- MG · Magnesium ion · metal · 3 copies · chains A, B, C
- NI · Nickel (II) ion · metal · chains A, C
- GOL · Glycerol · additive · 3 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1022 | 0.79 | 0.81 | 101 | GOL, MG |
| 2 | 279 | 0.57 | 0.77 | 43 | MG |
| 3 | 101 | 0.55 | 0.85 | 28 | GOL |
| 4 | 129 | 0.48 | 0.79 | 18 | NI |
Interfaces
3 interfaces between chains.
- B–C · 1552 Ų buried · 3 hydrogen bonds · protein-protein
- A–C · 1085 Ų buried · 21 hydrogen bonds · protein-protein
- A–B · 115 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 4FPP · Bacterial phosphotransferase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9A2T6
- Elsewhere: RCSB PDB 4FPP · PDBe 4FPP · UniProt Q9A2T6
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