Research workbench

The crystal structure of a functionally unknown conserved protein from bacillus anthracis str. ames.

Analyse The crystal structure of a functionally unknown conserved protein from bacillus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4FCA
Type: protein
Length: 482 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Conserved domain protein
UniProt: Q81XD4
Ligands: NI
Pockets: 4 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Conserved domain protein	protein	482	34% helix, 24% strand	Q81XD4

Ligands and binding sites

NI · Nickel (II) ion · metal · chains A
IMD · Imidazole · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	282	0.61	0.80	34	empty
2	241	0.53	0.76	45	empty
3	145	0.42	0.74	18	empty
4	108	0.38	0.75	13	empty

Modifications

Observed in the structure: 14 modified (engineered).

Compared structures

4FCA · The crystal structure of a functionally unknown conserved protein from Bacillus anthracis… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q81XD4
Elsewhere: RCSB PDB 4FCA · PDBe 4FCA · UniProt Q81XD4

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.