Research workbench
The crystal structure of the ferric yersiniabactin uptake receptor fyua from yersinia pestis
Analyse The crystal structure of the ferric yersiniabactin uptake receptor fyua from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4EPA
- Type
- protein
- Length
- 632 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pesticin receptor
- UniProt
- P46359
- Pockets
- 4 · best druggability 0.88
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pesticin receptor | protein | 632 | 3% helix, 59% strand | P46359 |
Ligands and binding sites
- LDA · Lauryl dimethylamine-N-oxide · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1195 | 0.88 | 0.90 | 149 | empty |
| 2 | 863 | 0.79 | 0.82 | 94 | empty |
| 3 | 565 | 0.77 | 0.84 | 62 | empty |
| 4 | 65 | 0.53 | 0.87 | 17 | empty |
Modifications
Observed in the structure: 15 modified (engineered).
Compared structures
- 4EPA · The crystal structure of the ferric yersiniabactin uptake receptor FyuA from Yersinia… · the same entry in another collection · chain A against A, TM-score 1.00
- P46359 · AlphaFold monomer V2.0 prediction for pesticin receptor (P46359) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46359
- Elsewhere: RCSB PDB 4EPA · PDBe 4EPA · UniProt P46359
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