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Crystal structure of had family hydrolase DR_1622 from deinococcus radiodurans R1 (target efi-501256) with bound citrate and sodium

Analyse Crystal structure of had family hydrolase DR_1622 from deinococcus radiodurans… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4EEL
Type: protein
Length: 229 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-phosphoglucomutase-related protein
UniProt: Q9RTX8
Ligands: NA
Pockets: 1 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-phosphoglucomutase-related protein	protein	229	50% helix, 13% strand	Q9RTX8

Ligands and binding sites

NA · Sodium ion · metal · chains A
CIT · Citric acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	379	0.59	0.76	40	CIT, NA

Compared structures

4EEL · Crystal structure of HAD FAMILY HYDROLASE DR_1622 from Deinococcus radiodurans R1 (TARGET… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RTX8
Elsewhere: RCSB PDB 4EEL · PDBe 4EEL · UniProt Q9RTX8

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