Decaplanin first P21-form

Structure

x-ray diffraction · 2 distinct chains · 0% helix, 15% strand (DSSP).

Ligands and binding sites

• ERE · 4-epi-vancosamine · ligand · 4 copies · chains A, B, C, D
• MLU · N-methyl-D-leucine · ligand · chains A
• BGC · beta-D-glucopyranose · sugar · 4 copies · chains A, B, C, D
• RAM · alpha-L-rhamnopyranose · sugar · 4 copies · chains A, B, C, D
• GOL · Glycerol · additive · 3 copies · chains B, A, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

5 interfaces between chains.

• A–C · 262 Ų buried · 5 hydrogen bonds · protein-protein
• C–D · 193 Ų buried · 9 hydrogen bonds · protein-protein
• A–B · 188 Ų buried · 8 hydrogen bonds · protein-protein
• B–C · 91 Ų buried · 0 hydrogen bonds · protein-protein
• A–D · 53 Ų buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 23 modified, 5 covalent, 4 glycan (nonstandard, covalent ligand, glycosylation).

Compared structures

• 1HH3 · Decaplanin first P21-Form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Elsewhere: RCSB PDB 1HH3 · PDBe 1HH3