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The X-ray crystal structure of full-length type I human plasminogen
Analyse The X-ray crystal structure of full-length type I human plasminogen in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4DUU
- Type
- protein
- Length
- 682 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Plasminogen
- EC
- 3.4.21.7
- UniProt
- P00747
- Pockets
- 9 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Plasminogen (EC 3.4.21.7) | protein | 682 | 5% helix, 24% strand | P00747 |
Pockets
9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 322 | 0.67 | 0.81 | 39 | empty |
| 2 | 483 | 0.66 | 0.78 | 51 | empty |
| 3 | 68 | 0.66 | 0.94 | 33 | empty |
| 4 | 526 | 0.61 | 0.75 | 50 | empty |
| 5 | 150 | 0.56 | 0.82 | 26 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00747
- Elsewhere: RCSB PDB 4DUU · PDBe 4DUU · UniProt P00747
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