Research workbench
Crystal structure of arabidopsis thaliana chalcone-isomerase like protein AT5G05270 (atchil)
Analyse Crystal structure of arabidopsis thaliana chalcone-isomerase like protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4DOK
- Type
- protein
- Length
- 416 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Similarity to chalcone-flavonone isomerase
- UniProt
- Q9FLC7
- Ligands
- CA
- Pockets
- 5 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Similarity to chalcone-flavonone isomerase | protein | 208 | 40% helix, 30% strand | Q9FLC7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 266 | 0.48 | 0.73 | 33 | empty |
| 2 | 72 | 0.48 | 0.83 | 18 | empty |
| 3 | 84 | 0.38 | 0.77 | 23 | empty |
| 4 | 70 | 0.37 | 0.78 | 18 | empty |
| 5 | 54 | 0.27 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 438 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 4DOK · Crystal structure of Arabidopsis thaliana chalcone-isomerase like protein At5g05270… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FLC7
- Elsewhere: RCSB PDB 4DOK · PDBe 4DOK · UniProt Q9FLC7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.