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Crystal structure of glucosyl-3-phosphoglycerate synthase from mycobacterium tuberculosis in complex with MG2+ and uridine- diphosphate (udp)
Analyse Crystal structure of glucosyl-3-phosphoglycerate synthase from mycobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4DE7
- Type
- protein
- Length
- 281 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucosyl-3-phosphoglycerate synthase (gpgs)
- EC
- 2.4.1.-
- UniProt
- O05309
- Ligands
- UDP
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glucosyl-3-phosphoglycerate synthase (gpgs) (EC 2.4.1.-) | protein | 281 | 40% helix, 19% strand | O05309 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 431 | 0.73 | 0.83 | 52 | UDP, GOL |
Compared structures
- 4DE7 · Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O05309
- Elsewhere: RCSB PDB 4DE7 · PDBe 4DE7 · UniProt O05309
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