GL1X · GenesisL1 explorer

Research workbench

Human biliverdin IX beta reductase: NADP complex

Analyse Human biliverdin IX beta reductase: NADP complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1HDO
Type
protein
Length
205 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Biliverdin IX beta reductase
EC
1.3.1.24
UniProt
P30043
Ligands
NAP
Pockets
1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 21% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ABiliverdin IX beta reductase (EC 1.3.1.24)protein20535% helix, 21% strandP30043

Ligands and binding sites

  • NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
14970.720.8143NAP

Compared structures

  • 1HDO · Human biliverdin IX beta reductase: NADP complex · the same entry in another collection · chain A against A, TM-score 1.00
  • P30043 · AlphaFold monomer V2.0 prediction for flavin reductase (NADPH) (P30043) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.