Research workbench
Banyan peroxidase with glycosylation
Analyse Banyan peroxidase with glycosylation in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4CUO
- Type
- protein
- Length
- 305 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Banyan peroxidase
- EC
- 1.11.1.7
- Ligands
- SNN, HEM, NAG, FUC, MAN, BMA, XYS, CA, NA, CO3, CL, SO4
- Pockets
- 1 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Banyan peroxidase (EC 1.11.1.7) | protein | 305 | 49% helix, 3% strand | — |
Ligands and binding sites
- SNN · L-3-aminosuccinimide · ligand · chains A
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 10 copies · chains A
- FUC · alpha-L-fucopyranose · sugar · 4 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 2 copies
- BMA · beta-D-mannopyranose · sugar
- XYS · alpha-D-xylopyranose · sugar
- CA · Calcium ion · metal · 2 copies · chains A
- NA · Sodium ion · metal · chains A
- CO3 · Carbonate ion · ion · 4 copies · chains A
- CL · Chloride ion · ion · 3 copies · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 305 | 0.84 | 0.94 | 41 | HEM, CL |
Modifications
Observed in the structure: 7 glycan, 4 disulfide, 2 covalent (N-glycosylation, disulfide, covalent ligand).
Compared structures
- 4CUO · Banyan peroxidase with glycosylation · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4CUO · PDBe 4CUO
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