Research workbench
Crystal structure of the voltage dependant anion channel 2 from zebrafish.
Analyse Crystal structure of the voltage dependant anion channel 2 from zebrafish. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4BUM
- Type
- protein
- Length
- 283 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Voltage-dependent anion channel 2
- UniProt
- Q8AWD0
- Pockets
- 3 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 64% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Voltage-dependent anion channel 2 | protein | 283 | 4% helix, 64% strand | Q8AWD0 |
Ligands and binding sites
- LDA · Lauryl dimethylamine-N-oxide · additive · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 205 | 0.52 | 0.77 | 34 | empty |
| 2 | 137 | 0.45 | 0.77 | 29 | empty |
| 3 | 140 | 0.42 | 0.75 | 28 | empty |
Compared structures
- 4BUM · Crystal structure of the Voltage Dependant Anion Channel 2 from zebrafish. · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8AWD0
- Elsewhere: RCSB PDB 4BUM · PDBe 4BUM · UniProt Q8AWD0
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