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Crystal structure of of lamacat from zobellia galactanivorans

Analyse Crystal structure of of lamacat from zobellia galactanivorans in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4BQ1
Type: protein
Length: 502 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endo-1,3-beta-glucanase, family GH16
EC: 3.2.1.39
UniProt: G0L5X4
Ligands: CA
Pockets: 4 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 2% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Endo-1,3-beta-glucanase, family GH16 (EC 3.2.1.39)	protein	251	2% helix, 52% strand	G0L5X4

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A, B
GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	173	0.65	0.86	45	empty
2	180	0.57	0.81	30	GOL
3	188	0.56	0.80	30	GOL
4	234	0.53	0.76	30	empty

Interfaces

1 interface between chains.

A–B · 658 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

4BQ1 · Crystal structure of of LamAcat from Zobellia galactanivorans · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G0L5X4
Elsewhere: RCSB PDB 4BQ1 · PDBe 4BQ1 · UniProt G0L5X4

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