Research workbench
Crystal structure of litopenaeus vannamei arginine kinase in binary complex with arginine
Analyse Crystal structure of litopenaeus vannamei arginine kinase in binary complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4BHL
- Type
- protein
- Length
- 348 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Arginine kinase
- EC
- 2.7.3.3
- UniProt
- Q004B5
- Ligands
- ARG
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Arginine kinase (EC 2.7.3.3) | protein | 348 | 43% helix, 18% strand | Q004B5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 370 | 0.56 | 0.74 | 45 | ARG |
Modifications
Observed in the structure: 1 covalent (additive adduct).
Compared structures
- 4BHL · Crystal structure of Litopenaeus vannamei arginine kinase in binary complex with arginine · the same entry in another collection · chain A against A, TM-score 1.00
- Q004B5 · AlphaFold monomer V2.0 prediction for arginine kinase lit V 2.0101 (Q004B5) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q004B5
- Elsewhere: RCSB PDB 4BHL · PDBe 4BHL · UniProt Q004B5
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