Research workbench
Structure of the human mitochondrial ABC transporter, ABCB10 (rod form B)
Analyse Structure of the human mitochondrial ABC transporter, ABCB10 (rod form B) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4AYX
- Type
- protein
- Length
- 571 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP-binding cassette sub-family B member 10
- UniProt
- Q9NRK6
- Ligands
- CDL, GLY, ACP, MG
- Pockets
- 5 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 65% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP-binding cassette sub-family B member 10 | protein | 571 | 65% helix, 11% strand | Q9NRK6 |
Ligands and binding sites
- CDL · Cardiolipin · ligand · 2 copies · chains A
- GLY · Glycine · ligand · chains A
- ACP · Phosphomethylphosphonic acid adenylate ester · ligand · chains A
- MG · Magnesium ion · metal · chains A
- LMT · Dodecyl-beta-D-maltoside · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 418 | 0.60 | 0.75 | 38 | empty |
| 2 | 167 | 0.53 | 0.79 | 25 | empty |
| 3 | 176 | 0.48 | 0.75 | 28 | empty |
| 4 | 55 | 0.30 | 0.75 | 19 | empty |
| 5 | 56 | 0.30 | 0.74 | 10 | empty |
Compared structures
- 4AYX · Structure of the human mitochondrial ABC transporter, ABCB10 (rod form B) · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NRK6 · AlphaFold monomer V2.0 prediction for ATP-binding cassette sub-family B member 10… · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NRK6
- Elsewhere: RCSB PDB 4AYX · PDBe 4AYX · UniProt Q9NRK6
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