Research workbench
Ligand controlled assembly of hexamers, dihexamers, and linear multihexamer structures by an engineered acylated insulin
Analyse Ligand controlled assembly of hexamers, dihexamers, and linear multihexamer… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4AKJ
- Type
- protein
- Length
- 100 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Insulin a chain; Insulin B chain
- UniProt
- P01308
- Ligands
- IPH, 16E, ZN, CL
Structure
x-ray diffraction · 2 distinct chains · 68% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Insulin a chain | protein | 21 | 67% helix, 5% strand | P01308 |
| B, D | Insulin B chain | protein | 29 | 69% helix, 10% strand | P01308 |
Ligands and binding sites
- IPH · Phenol · ligand · 2 copies · chains A, B, C, D
- 16E · N-(16-Carboxyhexadecanoyl)-L-glutamic acid · ligand · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains B, D
- CL · Chloride ion · ion · 2 copies · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
5 interfaces between chains.
- A–B · 657 Ų buried · 7 hydrogen bonds · protein-protein
- C–D · 647 Ų buried · 6 hydrogen bonds · protein-protein
- B–D · 646 Ų buried · 9 hydrogen bonds · protein-protein
- A–D · 50 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 33 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide, 1 covalent (disulfide, covalent ligand).
Compared structures
- 4AKJ · Ligand controlled assembly of hexamers, dihexamers, and linear multihexamer structures by… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01308
- Elsewhere: RCSB PDB 4AKJ · PDBe 4AKJ · UniProt P01308
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.