Research workbench

Solution structure of the birch pollen allergen bet V 4

Analyse Solution structure of the birch pollen allergen bet V 4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1H4B
Type: protein
Length: 84 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polcalcin bet V 4
UniProt: Q39419
Ligands: CA
Pockets: 1 · best druggability 0.52

Structure

solution nmr · 1 distinct chain · 67% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polcalcin bet V 4	protein	84	67% helix, 5% strand	Q39419

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	113	0.52	0.81	22	empty

Compared structures

1H4B · Solution structure of the birch pollen allergen bet V 4 · the same entry in another collection · chain A against A, TM-score 1.00
Q39419 · AlphaFold monomer V2.0 prediction for polcalcin bet V 4 (Q39419) · a predicted model of the same protein · chain A against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q39419
Elsewhere: RCSB PDB 1H4B · PDBe 1H4B · UniProt Q39419

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