Research workbench
Crystal structure of putrescine transcarbamylase from enterococcus faecalis lacking its C-terminal helix, with bound N5-(phosphonoacetyl)-L-ornithine
Analyse Crystal structure of putrescine transcarbamylase from enterococcus faecalis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4A8T
- Type
- protein
- Length
- 317 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putrescine carbamoyltransferase
- EC
- 2.1.3.6
- UniProt
- Q837U7
- Ligands
- PAO, NI
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putrescine carbamoyltransferase (EC 2.1.3.6) | protein | 317 | 46% helix, 15% strand | Q837U7 |
Ligands and binding sites
- PAO · N-(phosphonoacetyl)-L-ornithine · ligand · chains A
- NI · Nickel (II) ion · metal · chains A
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 218 | 0.61 | 0.82 | 37 | PAO |
Compared structures
- 4A8T · Crystal structure of putrescine transcarbamylase from Enterococcus faecalis lacking its… · the same entry in another collection · chain A against A, TM-score 1.00
- Q837U7 · AlphaFold monomer V2.0 prediction for putrescine carbamoyltransferase (Q837U7) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q837U7
- Elsewhere: RCSB PDB 4A8T · PDBe 4A8T · UniProt Q837U7
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