Research workbench
Apo form of glge isoform 1 from streptomyces coelicolor
Analyse Apo form of glge isoform 1 from streptomyces coelicolor in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ZSS
- Type
- protein
- Length
- 2,596 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative glucanohydrolase PEP1A
- EC
- 2.4.1.-, 3.2.1.-
- UniProt
- Q9L1K2
- Pockets
- 19 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Putative glucanohydrolase PEP1A (EC 2.4.1.-, 3.2.1.-) | protein | 649 | 34% helix, 25% strand | Q9L1K2 |
Pockets
19 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1097 | 0.79 | 0.81 | 84 | empty |
| 2 | 1128 | 0.79 | 0.81 | 92 | empty |
| 3 | 1125 | 0.79 | 0.80 | 93 | empty |
| 4 | 1107 | 0.78 | 0.80 | 77 | empty |
| 5 | 1079 | 0.76 | 0.79 | 121 | empty |
Interfaces
3 interfaces between chains.
- A–B · 2278 Ų buried · 33 hydrogen bonds · protein-protein
- C–D · 2248 Ų buried · 30 hydrogen bonds · protein-protein
- B–C · 61 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9L1K2
- Elsewhere: RCSB PDB 3ZSS · PDBe 3ZSS · UniProt Q9L1K2
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