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B. subtilis L,D-transpeptidase

Analyse B. subtilis L,D-transpeptidase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3ZQD
Type: protein
Length: 169 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: L, D-transpeptidase ykud
UniProt: O34816
Pockets: 1 · best druggability 0.28

Structure

solution nmr · 1 distinct chain · 18% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	L, D-transpeptidase ykud	protein	169	18% helix, 34% strand	O34816

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.28	0.75	13	empty

Compared structures

3ZQD · B. subtilis L,D-transpeptidase · the same entry in another collection · chain A against A, TM-score 1.00
O34816 · AlphaFold monomer V2.0 prediction for putative L,D-transpeptidase ykud (O34816) · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O34816
Elsewhere: RCSB PDB 3ZQD · PDBe 3ZQD · UniProt O34816

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