UniProt O34816
Putative L,D-transpeptidase ykud (O34816)
Putative L,D-transpeptidase ykud (UniProt O34816): 14 experimental structures and 1 predicted model on GenesisL1. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- O34816
- Protein
- Putative L,D-transpeptidase ykud
- Experimental structures
- 14
- Predicted models
- 1
Structures
15 records of O34816 in the MolNFT archive: 14 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1Y7M | Crystal Structure of the B. subtilis YkuD protein at 2 A resolution | x-ray diffraction | A, B | — | — |
| 1Y7M | Crystal structure of the B. subtilis ykud protein at 2 a resolution | x-ray diffraction | A, B | — | — |
| 2MTZ | Haddock model of Bacillus subtilis L,D-transpeptidase in complex with a peptidoglycan… | solid-state nmr | A | — | — |
| 2MTZ | Haddock model of bacillus subtilis L,D-transpeptidase in complex with a peptidoglycan… | solid-state nmr | A | — | — |
| 3ZQD | B. subtilis L,D-transpeptidase | solution nmr | A | — | — |
| 3ZQD | B. subtilis L,D-transpeptidase | solution nmr | A | — | — |
| 4A1I | ykud from B.subtilis | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| 4A1I | Ykud from B.SUBTILIS | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| 4A1J | Ykud L,D-transpeptidase from B.subtilis | x-ray diffraction | A, B | — | — |
| 4A1J | Ykud L,D-transpeptidase from B.SUBTILIS | x-ray diffraction | A, B | — | — |
| 4A1K | Ykud L,D-transpeptidase | x-ray diffraction | A | — | — |
| 4A1K | Ykud L,D-transpeptidase | x-ray diffraction | A | — | — |
| 4A52 | NMR structure of the imipenem-acylated L,D-transpeptidase from Bacillus subtilis | solution nmr | A | — | — |
| 4A52 | NMR structure of the imipenem-acylated L,D-transpeptidase from bacillus subtilis | solution nmr | A | — | — |
| O34816 | AlphaFold monomer V2.0 prediction for putative L,D-transpeptidase ykud (O34816) | predicted | A | — | — |
Experiment against prediction
- 4A1I chain A against the predicted model O34816: TM-score 0.99, RMSD 0.39 Å
- 4A1I chain A against the predicted model O34816: TM-score 0.99, RMSD 0.39 Å
- 4A1J chain A against the predicted model O34816: TM-score 0.98, RMSD 0.61 Å
- 4A1J chain A against the predicted model O34816: TM-score 0.98, RMSD 0.61 Å
- 1Y7M chain A against the predicted model O34816: TM-score 0.98, RMSD 0.49 Å
- 1Y7M chain A against the predicted model O34816: TM-score 0.98, RMSD 0.49 Å
- 4A1I chain E against the predicted model O34816: TM-score 0.98, RMSD 0.64 Å
- 4A1I chain E against the predicted model O34816: TM-score 0.98, RMSD 0.64 Å
- 4A1K chain A against the predicted model O34816: TM-score 0.96, RMSD 0.97 Å
- 4A1K chain A against the predicted model O34816: TM-score 0.96, RMSD 0.97 Å
Elsewhere
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