Research workbench
Cetz from methanosaeta thermophila strain dsm 6194
Analyse Cetz from methanosaeta thermophila strain dsm 6194 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ZID
- Type
- protein
- Length
- 702 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TUBULIN/FTSZ, GTPase
- UniProt
- A0B5R2
- Ligands
- GDP
- Pockets
- 11 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 52% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TUBULIN/FTSZ, GTPase | protein | 360 | 53% helix, 20% strand | A0B5R2 |
| B | TUBULIN/FTSZ, GTPase | protein | 342 | 50% helix, 20% strand | A0B5R2 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 577 | 0.69 | 0.78 | 58 | empty |
| 2 | 374 | 0.60 | 0.76 | 49 | empty |
| 3 | 161 | 0.57 | 0.82 | 31 | GDP |
| 4 | 83 | 0.55 | 0.86 | 21 | empty |
| 5 | 152 | 0.55 | 0.81 | 30 | GDP |
Interfaces
1 interface between chains.
- A–B · 1112 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0B5R2
- Elsewhere: RCSB PDB 3ZID · PDBe 3ZID · UniProt A0B5R2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.