Research workbench
Crystal structure of the oxidized form of the solubilized domain of porcine cytochrome B5 in form 1 crystal
Analyse Crystal structure of the oxidized form of the solubilized domain of porcine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3X32
- Type
- protein
- Length
- 87 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome B5
- UniProt
- P00172
- Ligands
- HEM, CA
- Pockets
- 1 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome B5 | protein | 87 | 33% helix, 23% strand | P00172 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- CA · Calcium ion · metal · 2 copies · chains A
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 107 | 0.60 | 0.86 | 19 | HEM |
Compared structures
- 3X32 · Crystal structure of the oxidized form of the solubilized domain of porcine cytochrome b5… · the same entry in another collection · chain A against A, TM-score 1.00
- P00172 · AlphaFold monomer V2.0 prediction for cytochrome B5 (P00172) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00172
- Elsewhere: RCSB PDB 3X32 · PDBe 3X32 · UniProt P00172
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