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Crystal structure of metallo-beta-lactamase from thermotoga maritima

Analyse Crystal structure of metallo-beta-lactamase from thermotoga maritima in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3X30
Type
protein
Length
227 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
UPF0173 metal-dependent hydrolase TM_1162
UniProt
Q9X0P5
Ligands
MN, NI

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 31% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AUPF0173 metal-dependent hydrolase TM_1162protein22725% helix, 31% strandQ9X0P5

Ligands and binding sites

  • MN · Manganese (II) ion · metal · chains A
  • NI · Nickel (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

  • 3X30 · Crystal structure of metallo-beta-lactamase from Thermotoga maritima · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9X0P5 · AlphaFold monomer V2.0 prediction for UPF0173 metal-dependent hydrolase TM_1162 (Q9X0P5) · a predicted model of the same protein · chain A against A, TM-score 0.99

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